PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM454
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 249: /---------- AT1G60880.1 [Arabidopsis thaliana] (2) | /------100-----+ /----- Araha.11209s0002.1.p [Arabidopsis halleri] (35) | \-100+ | \----- 475244 [Arabidopsis lyrata] (42) | | /--------------- Carubv10021715m [Capsella rubella] (17) /-91-+ | | | | /----- Csa16g052720.1 [Camelina sativa] (36) | | /-100+ /-100+ | | | | | \----- Csa09g095380.1 [Camelina sativa] (58) | | | \-100+ | \-97-+ \---------- Csa07g062030.1 [Camelina sativa] (120) | | /--82-+ \-------------------- Bostr.10040s0123.1.p [Boechera stricta] (140) | | | | /----- Csa09g095430.1 [Camelina sativa] (20) | | /-91-+ | | | \----- Csa16g052790.1 [Camelina sativa] (33) | | /-100+ | | | \---------- Csa07g062070.1 [Camelina sativa] (22) /-80-+ \------99------+ | | | /----- Carubv10021738m [Capsella rubella] (63) | | \---100---+ | | \----- Cagra.1216s0008.1.p [Capsella grandiflora] (96) | | | | /----- 475240 [Arabidopsis lyrata] (29) | \--------------100-------------+ | \----- AT1G60920.1 [Arabidopsis thaliana] (121) | | /----- 676776274 [Sisymbrium irio] (9) | /------59------+ | | \----- 676776276 [Sisymbrium irio] (93) | | | | /----- RrC688_p6 [Raphanus raphanistrum] (24) /-61-+ /----53---+ /---100---+ | | | | | \----- Rsa1.0_02758.1_g00002.1 [Raphanus sativus] (46) | | | | | | | | | | /----- XP_009123497.1 [Brassica rapa] (40) | | | \-100+ | | | | | /-100+----- GSBRNA2T00014621001 [Brassica napus] (60) | | | | | | | | | \-100+ \----- XP_009123499.1 [Brassica rapa] (141) | | | | | | | \---------- XP_013610889.1 [Brassica oleracea] (126) | | | | | | /----- XP_013607713.1 [Brassica oleracea] (10) | | | /-99-+ | \----60----+ | \----- GSBRNA2T00069732001 [Brassica napus] (116) | | /-100+ | | | | /----- XP_009113240.1 [Brassica rapa] (119) /-57-+ | | \-100+ | | | /-100+ \----- GSBRNA2T00070528001 [Brassica napus] (134) | | | | | | | | | | /----- RrC6615_p2 [Raphanus raphanistrum] (23) | | | | \---100---+ | | | /-86-+ \----- Rsa1.0_03102.1_g00002.1 [Raphanus sativus] (76) | | | | | | | | | | /----- Tp2g03770 [Thellungiella parvula] (110) | | | | \------100-----+ | | \-86-+ \----- Tp2g03710 [Thellungiella parvula] (118) | | | | | | /----- Thhalv10023871m [Eutrema salsugineum] (27) | | \---------99--------+ | | \----- Thhalv10023813m [Eutrema salsugineum] (142) /-70-+ | | | \---------------------------------------------- XP_010552915.1 [Tarenaya hassleriana] (55) | | | | /----- XP_010548848.1 [Tarenaya hassleriana] (39) | | /---100---+ | | | \----- XP_010548849.1 [Tarenaya hassleriana] (129) | | | | | /-84-+ /----- XP_010535252.1 [Tarenaya hassleriana] (48) | | | | /-100+ | | | | | \----- XP_010535251.1 [Tarenaya hassleriana] (64) | | /-97-+ \-100+ | | | | \---------- XP_010535254.1 [Tarenaya hassleriana] (127) | | | | | \------------88-----------+ \-------------------- XP_010547838.1 [Tarenaya hassleriana] (78) | | | | /----- XP_010547911.1 [Tarenaya hassleriana] (135) | \--------100--------+ | \----- XP_010547925.1 [Tarenaya hassleriana] (136) | | /----- GSBRNA2T00143077001 [Brassica napus] (5) | /-100+ | | \----- XP_013596955.1 [Brassica oleracea] (145) | /-95-+ | | \---------- Rsa1.0_00818.1_g00004.1 [Raphanus sativus] (56) | /-94-+ | | | /----- GSBRNA2T00144356001 [Brassica napus] (81) | | \---100---+ | | \----- XP_009151734.1 [Brassica rapa] (124) | | | | /----- GSBRNA2T00143104001 [Brassica napus] (13) | /---------100--------+ /-100+ | | | | \----- XP_013594963.1 [Brassica oleracea] (98) | | | /-100+ | | | | | /----- XP_009151512.1 [Brassica rapa] (72) | | | | \-100+ | | \-99-+ \----- GSBRNA2T00144321001 [Brassica napus] (110) | | | | | | /----- RrC49560_p1 [Raphanus raphanistrum] (41) | | \---100---+ | | \----- Rsa1.0_00362.1_g00007.1 [Raphanus sativus] (117) | | | | /------------------------------ Tp6g06330 [Thellungiella parvula] (6) | | | | | | /----- Csa11g078300.1 [Camelina sativa] (18) | | | /-86-+ | | | | \----- Csa02g035210.1 [Camelina sativa] (83) | | | /-97-+ | | | | | /----- Csa03g060500.1 [Camelina sativa] (74) | |----68----+ | \-89-+ | | | /-97-+ \----- Csa02g035060.1 [Camelina sativa] (91) | | | | | | | | /-83-+ \--------------- Carubv10028105m [Capsella rubella] (89) | | | | | | | | | \-------------------- Bostr.15774s0044.1.p [Boechera stricta] (44) | | | | | | \-91-+ /----- AT5G38620.1 [Arabidopsis thaliana] (59) | | | /-100+ | | | | \----- AT5G49420.1 [Arabidopsis thaliana] (82) /-60-+ | \------92------+ | | | | /----- Araha.3709s0001.1.p [Arabidopsis halleri] (125) | | | \-60-+ | | | \----- AT5G49490.1 [Arabidopsis thaliana] (130) | | | | | | /----- 676748812 [Sisymbrium irio] (8) | | | /-----------92-----------+ | | | | \----- 676707426 [Sisymbrium irio] (80) | | | | | | | | /----- Rsa1.0_00769.1_g00002.1 [Raphanus sativus] (11) | | | | /-100+ | | | | | \----- Rsa1.0_01854.1_g00005.1 [Raphanus sativus] (131) | | | | /-80-+ | | | | | | /----- Rsa1.0_07319.1_g00001.1 [Raphanus sativus] (65) | | | | | \-53-+ | | | | /-56-+ \----- Rsa1.0_00134.1_g00010.1 [Raphanus sativus] (90) | | | | | | | | | | | \--------------- RrC5633_p4 [Raphanus raphanistrum] (97) | | | /--87-+ | | | | | | | /----- RrC12231_p5 [Raphanus raphanistrum] (12) | | | | | /-97-+ /-64-+ | | | | | | | | \----- RrC8572_p1 [Raphanus raphanistrum] (190) | | | | | | | /-52-+ | | | | | | | | \---------- Rsa1.0_00887.1_g00007.1 [Raphanus sativus] (54) | | | | | | \-64-+ | | | | | | \--------------- RrC38630_p1 [Raphanus raphanistrum] (70) | | | | | | | | | | | | /----- XP_009148220.1 [Brassica rapa] (53) | | /-63-+ | | | /-100+ | | | | | \-100+ | \----- GSBRNA2T00156356001 [Brassica napus] (68) | | | | | | /-59-+ | | | | | | | | /----- XP_013588961.1 [Brassica oleracea] (69) | | | | | | | \-100+ | | | | | | /-99-+ \----- GSBRNA2T00096909001 [Brassica napus] (113) | | | | | | | | | | | | | | | | /----- GSBRNA2T00039065001 [Brassica napus] (77) | | | | | | | \---100---+ | | | | | \-79-+ \----- XP_013588993.1 [Brassica oleracea] (140) | | | |-90-+ | | | | | | | /----- XP_013588958.1 [Brassica oleracea] (67) | | | | | \------100-----+ | | | | | \----- GSBRNA2T00093550001 [Brassica napus] (95) | | | | | | | | | | /---------- XP_009107574.1 [Brassica rapa] (37) | | | | | | | | | | | /-68-+ /----- XP_009107578.1 [Brassica rapa] (47) | | | | | | \-100+ --78-+ | | | | /-53-+ \----- GSBRNA2T00091115001 [Brassica napus] (57) | | | | | | | | | | | | | \--------------- GSBRNA2T00091140001 [Brassica napus] (122) | | | | | /-53-+ | | | | | | | /----- GSBRNA2T00052939001 [Brassica napus] (51) | | | | | | \------86------+ | | | | | /-100+ \----- GSBRNA2T00127904001 [Brassica napus] (52) | | | | | | | | | | | | | | /----- GSBRNA2T00066948001 [Brassica napus] (92) | | | | | | \--------100--------+ | | | | \-100-+ \----- XP_013601021.1 [Brassica oleracea] (160) | \----77---+ | | | | | | /---------- RrC13082_p1 [Raphanus raphanistrum] (43) | | | | | | | | \--------100--------+ /----- Rsa1.0_37341.1_g00001.1 [Raphanus sativus] (130) | | | \-97-+ | | | \----- Rsa1.0_00072.1_g00017.1 [Raphanus sativus] (120) | | | | | | /----- Thhalv10029235m [Eutrema salsugineum] (15) | | | /-100+ | | | | \----- Thhalv10029380m [Eutrema salsugineum] (88) | | | /-100+ | | | | \---------- Thhalv10029256m [Eutrema salsugineum] (144) | | |------------51-----------+ | | | \--------------- Tp6g07320 [Thellungiella parvula] (111) | | | | | | /----- 676766586 [Sisymbrium irio] (31) | | | /----93---+ | | | | \----- 676736438 [Sisymbrium irio] (73) | | | | | | |------------82-----------+ /---------- Rsa1.0_00095.1_g00022.1 [Raphanus sativus] (45) | | | | | | | | \-97-+ /----- XP_009139672.1 [Brassica rapa] (50) | | | \-66-+ | | | \----- GSBRNA2T00070348001 [Brassica napus] (128) | | | | | \----------------------------------------- Tp1g36460 [Thellungiella parvula] (85) | | | | /---------- KFK26164.1 [Arabis alpina] (28) | | | | \----------------100----------------+ /----- KFK39675.1 [Arabis alpina] (170) | \-61-+ | \----- KFK26115.1 [Arabis alpina] (137) | | /--------------- Csa12g057290.1 [Camelina sativa] (7) | | | | /----- Cagra.1718s0014.1.p [Capsella grandiflora] (38) \----------------------97---------------------+ /-100+ | | \----- Carubv10006209m [Capsella rubella] (62) \-95-+ \---------- Bostr.0597s0065.1.p [Boechera stricta] (115) Subtree rooted at node 269: /------------------------------------ (249) | | /----- GSBRNA2T00080930001 [Brassica napus] (3) | /-95-+ | | \----- XP_013608535.1 [Brassica oleracea] (66) | /-97-+ | | | /----- XP_009122928.1 [Brassica rapa] (86) | | \-100+ | /-95-+ \----- GSBRNA2T00136331001 [Brassica napus] (138) | | | | | | /----- RrC13371_p1 [Raphanus raphanistrum] (4) /-97-+ /-59-+ \---100---+ | | | | \----- Rsa1.0_11288.1_g00002.1 [Raphanus sativus] (139) | | | | | | /-94-+ \-------------------- 676706524 [Sisymbrium irio] (94) | | | | | | | \------------------------- Tp5g22450 [Thellungiella parvula] (14) | |--80-+ | | |------------------------------ Thhalv10023175m [Eutrema salsugineum] (21) /-94-+ | | | | | \------------------------------ Thhalv10015623m [Eutrema salsugineum] (99) | | | | | \------------------------------------ KFK25586.1 [Arabis alpina] (49) | | | | /---------- AT1G46408.1 [Arabidopsis thaliana] (100) /-63-+ | | | | \--------------68--------------+ /----- AT5G04640.1 [Arabidopsis thaliana] (133) | | \-72-+ | | \----- Bostr.26959s0207.1.p [Boechera stricta] (143) /-86-+ | | | \---------------------------------------------- Carubv10021917m [Capsella rubella] (84) | | | | /----- Carubv10022197m [Capsella rubella] (61) | \----------------------72---------------------+ /-91-+ \----- Carubv10025699m [Capsella rubella] (87) | | | | /----- Csa05g081500.1 [Camelina sativa] (25) | | /-100+ | | | \----- Csa05g041620.1 [Camelina sativa] (180) --96-+ \----------------------97---------------------+ | \---------- Csa07g032730.1 [Camelina sativa] (34) | | /----- Csa16g024140.1 [Camelina sativa] (16) \---------------------------93--------------------------+ \----- Csa05g079830.1 [Camelina sativa] (123) Root part of tree: /------------------------------------------------------------------ Csa06g021890.1 [Camelina sativa] (1) | | /---------------------------------------- (269) | | | | /------------- Csa04g034380.1 [Camelina sativa] (19) | /-----71-----+ /-----100----+ | | | | \------------- Csa04g034390.1 [Camelina sativa] (132) | | \------95-----+ | | | /------------- Csa04g034010.1 [Camelina sativa] (32) | | \-----99-----+ | | \------------- Csa04g033780.1 [Camelina sativa] (114) | | +-----100----+ /------------- Csa09g050960.1 [Camelina sativa] (26) | | | | | /-----51-----+------------- Csa09g051540.1 [Camelina sativa] (75) | | | | | | /------99-----+ \------------- Csa09g050990.1 [Camelina sativa] (150) | | | | | \-----76-----+ \-------------------------- Csa07574s010.1 [Camelina sativa] (30) | | | \---------------------------------------- Csa09g048810.1 [Camelina sativa] (112) | | /------------- Csa06g022610.1 [Camelina sativa] (71) \-------------------------100------------------------+ \------------- Csa06g022440.1 [Camelina sativa] (79) |