PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_37341.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 111aa MW: 12095 Da PI: 10.698 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39 | 1.1e-12 | 14 | 53 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+ie+ks + vtfskRr g+ KA L+v+ +a++a++ Rsa1.0_37341.1_g00001.1 14 KKIEDKSSKAVTFSKRRDGLYSKAAQLCVMGEAQIAILAT 53 68**********************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.928 | 6 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-10 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-15 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.65E-18 | 7 | 85 | No hit | No description |
PRINTS | PR00404 | 2.7E-8 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-12 | 15 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-8 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MVKRGGTKRK AVLKKIEDKS SKAVTFSKRR DGLYSKAAQL CVMGEAQIAI LATPSSSNSN 60 VPFFSFGHSS VDSLVSAYLS GQRPVRVPEE SKKMREDIGI CMARKELGLS N |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_37341.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448804.1 | 2e-73 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 3e-32 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A078CKG7 | 8e-60 | A0A078CKG7_BRANA; BnaC08g02610D protein | ||||
STRING | Bra014217.1-P | 3e-59 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49420.1 | 4e-38 | M-type_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|