PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535251.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26126.2 Da    PI: 4.7049
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.1e-161151141
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +rie k  r+v fskRr+g+  KA+EL+ LCda +a+++  
  XP_010535251.1 11 ERIEKKESRSVAFSKRREGLYRKASELCRLCDAHIAILVTP 51
                    69***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.264349IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-15363IPR002100Transcription factor, MADS-box
CDDcd002669.00E-25483No hitNo description
PRINTSPR004043.3E-10525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-20581IPR002100Transcription factor, MADS-box
PfamPF003195.7E-171253IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGGTKRKIPM ERIEKKESRS VAFSKRREGL YRKASELCRL CDAHIAILVT PPSANSNVSF  60
YSFGHSSVDD VVDAFLHNRP PTSSHDHALS KNRDRLAGKK PSSGLGFRWE EDGFEETANT  120
RDLEVAIDEI SELMNIVKRR LDDKMNETPR LAETTNLAEP SVLGLESDGG KRDDSLVGNL  180
APQVSDQPIM AISDIGFEEL GEGPTMEGVV PLSHKEFQDI IDNFNFDDIA PDFCF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535251.11e-174PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010535252.11e-174PREDICTED: agamous-like MADS-box protein AGL97
STRINGXP_010535251.11e-173(Tarenaya hassleriana)
STRINGXP_010535252.11e-173(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.14e-44AGAMOUS-like 55