PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139672.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 299aa    MW: 33158.8 Da    PI: 4.111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.71.3e-071852640
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                       + +tf+kR  g+  K + L+ L+da++av+  
  XP_009139672.1 18 RESAATTFTKRSYGLHSKVSQLCLLTDAQIAVLAT 52
                    55678***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-4568IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.204550IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-11678IPR002100Transcription factor, MADS-box
PfamPF003196.7E-81555IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVKGGTKRKA TMEGITKRES AATTFTKRSY GLHSKVSQLC LLTDAQIAVL ATPPSSNSNV  60
SFFSFGHSSV DSIVTAFLTG ERPAVREEID DHEDLGICLA RKELGLPQWW EDDALLKSKS  120
PQELSLAINS MSRLLSKINE LRAQDAEAEA EPPLKKQKKK TEPTVEQTLV LRSGSSDKTL  180
DYNNNNNDSL EEIDFDQLID LDLDLDFDFE SMNSSDNNDE TMKMTEPLDQ PLLLPYDICA  240
SPDNNNTYST GEMSLDYGID KQLQETTIAM SSVACDDGVS ALNEDDINFS DFLTQFLQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139672.10.0PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_018513651.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A397KYY70.0A0A397KYY7_BRACM; Uncharacterized protein
STRINGBra032767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.13e-47M-type_MADS family protein