PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g048810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 266aa MW: 29499.3 Da PI: 3.9668 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48 | 1.6e-15 | 12 | 50 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+ie k r vtfskRr+g++ KA+EL+ L da++a++ Csa09g048810.1 12 KKIEGKQPRAVTFSKRRKGLFSKASELCLLSDAQIAILA 50 6899********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-13 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.97 | 4 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.19E-21 | 5 | 83 | No hit | No description |
PRINTS | PR00404 | 7.8E-6 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-17 | 12 | 98 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-14 | 13 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-6 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGGLKRKIDT EKKIEGKQPR AVTFSKRRKG LFSKASELCL LSDAQIAILA TPVSANSHNS 60 FYTFGHSSVD SVVAAFLSDQ TPTRDDVDDE NLGFWWEDES LANSENPEEL ADAIDSMKRM 120 LQDLKELQRD HQHVVVEKEN NNNNASFTLR GNDDVGGCSN QGILSTDSEV HETQSQAMPM 180 IDYVGEGCSN QGLDFDQIFD SAVPETQSQA LPMIDSDNFD QILPIDSEVD ETKSQAMPMI 240 DLDDDYSLFF SSDFFNEIDI DALYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g048810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431101.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 1e-55 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HI75 | 2e-56 | R0HI75_9BRAS; Uncharacterized protein | ||||
STRING | XP_010431101.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46408.1 | 6e-58 | AGAMOUS-like 97 |
Publications ? help Back to Top | |||
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