PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g03710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22742.3 Da    PI: 4.9821
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g03710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.96.3e-091951940
               HHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE CS
     SRF-TF  9 rqvtfskRrngilKKAeELSvLC.daevaviif 40
                 v+f+kRr+g++ KA+ L+ L  ++++a+++ 
  Tp2g03710 19 IAVSFTKRRKGLFSKASKLCLLSpGTQIAILVT 51
               579*******************75788888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-7364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.045351IPR002100Transcription factor, MADS-box
CDDcd002661.24E-16482No hitNo description
SuperFamilySSF554553.14E-11478IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-5525IPR002100Transcription factor, MADS-box
PfamPF003191.2E-72064IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-52540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGGKKRKIKI EKLVNKPAIA VSFTKRRKGL FSKASKLCLL SPGTQIAILV TPAASNSHSS  60
FYTFGHSSVD HVVSSLLNDQ VPLEATNQEN MPGLGFWWED EGFERLENVD DLKDATDAIT  120
RTLNNLRLRL DTVKSTQRDE GLVIHQDEGS RLRNTETNNN KKETTNQLTR FEGTSGSESL  180
VENEEDTLDI DDFFTDPNID PLF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g03710
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392097.13e-90agamous-like MADS-box protein AGL97
TrEMBLV4KPT86e-89V4KPT8_EUTSA; Uncharacterized protein
STRINGXP_006392097.11e-89(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.13e-61AGAMOUS-like 55