PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009107574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 277aa MW: 30408.8 Da PI: 4.2389 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.7 | 1.3e-12 | 14 | 53 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+i +ks + vtf+kRr g++ KA L+ L da++a++ XP_009107574.1 14 KKITDKSSKAVTFTKRRDGLFSKAAQLCLLGDAQIAILAT 53 6899********************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.979 | 6 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-14 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.83E-23 | 7 | 86 | No hit | No description |
PRINTS | PR00404 | 8.0E-8 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-16 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-12 | 15 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-8 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN 60 VSFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSKEMREDI AVCMARKELG LGYWWEDEEL 120 LASKSRDEIM EAMESMHILW KAAERLREDE AIDFDQREGS LEKMEDMSND QTTLISTEDD 180 QIIAVCDSFF NNNNNNNAAS LSATPADEDD HHHQIEAVSE NYCSNNMNAL LSPPAAAAGG 240 GLNDQNLLDL DLANLDLDTI FEGLADLDAE FVASLLM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009107574.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107574.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | M4DCK2 | 0.0 | M4DCK2_BRARP; Uncharacterized protein | ||||
STRING | Bra014217.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49420.1 | 4e-47 | M-type_MADS family protein |