PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535254.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 353aa    MW: 39623.9 Da    PI: 6.4437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.2e-17129169141
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 
                     +rie k  r+v fskRr+g++ KA+EL+ LCda +a+++  
  XP_010535254.1 129 ERIEKKESRSVAFSKRREGLFRKASELCRLCDAHIAILVTP 169
                     69***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-17121181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516121167IPR002100Transcription factor, MADS-box
CDDcd002666.44E-24122201No hitNo description
SuperFamilySSF554553.4E-20123199IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-10123143IPR002100Transcription factor, MADS-box
PfamPF003191.8E-17130171IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-10143158IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-10158179IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATTGDFNFP ATRDFRFEFH FSVGKRFEFR QEKRKKCRER SMFKAYKGMN SRQPSPFSLT  60
VHLSLPLPPS LSLSLSLSIT VAVLLSRALS LSVEHRHLRL SLSLEHFHCS PLSSENLEMG  120
GTKRKIPMER IEKKESRSVA FSKRREGLFR KASELCRLCD AHIAILVTPP SANSNVSFYS  180
FGHSSVDDVV DAFLHNRPPT SSHDHALSKN RDRLAGKKPS SGLGFRWEED GFEETANTRD  240
LEVAIDEISE LMNIVKRRLD DKMNETPRLA ETTNLAEPSV LGLESDGGKR DDSLVGNLAP  300
QVSDQPIMAI SDMGFQELGE GPTMEGVVPL SDKEFQDIID TINFDDIAPD FCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535254.10.0PREDICTED: transcription factor CAULIFLOWER-like
STRINGXP_010535254.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.14e-45AGAMOUS-like 55