PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0044.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24821 Da    PI: 4.6583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.43.9e-0825521340
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                           +kRrng++ KA+ ++ L +a++a++  
  Bostr.15774s0044.1.p 25 CTKRRNGLFSKASQICLLSGAQIAILAT 52
                          58**********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.489550IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-10568IPR002100Transcription factor, MADS-box
CDDcd002661.61E-21685No hitNo description
PRINTSPR004046.5E-5727IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-13779IPR002100Transcription factor, MADS-box
PfamPF003192.6E-81555IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-52742IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKGGMKRKI EIKTIMNKSS LRPICTKRRN GLFSKASQIC LLSGAQIAIL ATPPSSESNV  60
SFYSFGHSSV DGVVSAFLSG QRPVPALNPD DKKEMREDVG ICLTRKNLGL GFWWDNESLA  120
RSENPQEISD AIDSMWTLLS NLKELRAEEA FVNDHEDLTN NEKSDVVLDH ATQEPDQTLN  180
LHSRTSAICC VPGDLPENFN EITEEQDQIL TICESFCVTG TVPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881008.11e-117agamous-like MADS-box protein AGL97
TrEMBLA0A178UBU01e-111A0A178UBU0_ARATH; Uncharacterized protein
STRINGBostr.15774s0044.1.p1e-166(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-115M-type_MADS family protein