PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00818.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30302.2 Da    PI: 4.8358
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00818.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.51.5e-0723521039
                             HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                   SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevavii 39
                              +tf+kR  g+  KA  L+ L +a++a++ 
  Rsa1.0_00818.1_g00004.1 23 RTTFTKRCSGLYSKAAQLCLLSGAQIAILA 52
                             69*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.788651IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-4669IPR002100Transcription factor, MADS-box
CDDcd002663.06E-17783No hitNo description
SuperFamilySSF554554.71E-12780IPR002100Transcription factor, MADS-box
PfamPF003193.2E-81556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVKRGGTKRK INLEKITRRE YLRTTFTKRC SGLYSKAAQL CLLSGAQIAI LATPPSSQSN  60
VSFFSFGHSS VDAVVNAYLT GQRLAPVREE PMEEDIGVQM ARKELGLELW WEKESLSKSK  120
NRQELMAAIR SMERMLSKLR SLDFVDNYKQ RDDEDVKKDE MAKKSDVVLR KETQEPDETL  180
NLQAVCCIPP DDDLAAAGFD KITEEQDQIL AICDSFCVKE DNNGLTGSLD RSDQAMDHLV  240
KTDLETTCES SAFDYGVLGS TQELHETAGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00818.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481945.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3DC521e-148A0A0D3DC52_BRAOL; Uncharacterized protein
STRINGBo7g092540.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.14e-63M-type_MADS family protein