PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g035060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28150.3 Da    PI: 4.3933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g035060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.14.8e-0827531440
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40
                     kRrng++ KA+ L+ L +a++a++  
  Csa02g035060.1 27 VKRRNGLFSKASQLCLLSGAQIAILAT 53
                    69*********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.942660IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-9665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-12880IPR002100Transcription factor, MADS-box
PfamPF003192.0E-81558IPR002100Transcription factor, MADS-box
CDDcd002665.55E-162686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVKKGGMKTK IEIKKITKKT SLGPICVKRR NGLFSKASQL CLLSGAQIAI LATPPSSESH  60
VSFYSFGHSS VDGVVSAFLS GQRPVPVPNP EDDQAMREDV GICLTRKDLG LGFWWNNERL  120
VRSEDPREIS DAIDSMWTLL GNLKDLRADQ ASFVNNNNQA FVVNDDHEDL KNNEKSGFTT  180
EEQDQIPPLC ESFCVTDNNN NNNSFTKVNL DFDQELDIDQ LIDFDTDFES SLDNWYTHQE  240
NLDQCFPYIS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g035060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471755.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0GDK71e-109R0GDK7_9BRAS; Uncharacterized protein
STRINGXP_010471755.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-72M-type_MADS family protein