PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601021.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31366.3 Da    PI: 4.8958
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-123069140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k+i +ks + vtf+kRr g++ KA  L+ L da++a++  
  XP_013601021.1 30 KKITDKSSKAVTFTKRRDGLFSKAAQLCLLGDAQIAILAT 69
                    6899********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-142282IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.9792273IPR002100Transcription factor, MADS-box
CDDcd002662.27E-2223102No hitNo description
PRINTSPR004048.2E-82444IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-162496IPR002100Transcription factor, MADS-box
PfamPF003196.2E-123171IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-84459IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGGMKRITWG FRFLRTMVKR GGTKRKAEIK KITDKSSKAV TFTKRRDGLF SKAAQLCLLG  60
DAQIAILATP SSSHSNVSFF SFGHSSVDSV VSAYLSGQRP APPPVPEDSR EMREDIAVCM  120
ARKELGLGYW WEDEKLLASK SREEIMEAME SMQILWKAAE RLRDEYVVEF DQRKGSHEKK  180
EDMSNDQTTL ISTEDDQIIA VCDSFFNYNN NNAALSTTPP DEDEHHHQIE AVSENYCSNK  240
NALLSPPAAA GGGLNDLANV DLDTIFEGLA DLDAELVASF LM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601021.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A0D3DJG30.0A0A0D3DJG3_BRAOL; Uncharacterized protein
STRINGBo8g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.18e-45M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]