PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113240.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26272 Da    PI: 4.9021
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.48.8e-141149138
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT.-EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCd.aevavi 38
                    k+ie+k  r+vtf+kRr+g++ KA+EL+ L   +++a++
  XP_009113240.1 11 KFIEDKAVRSVTFCKRREGLFSKASELCLLSPtTQIAIL 49
                    79****************************851466665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-11364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.423340IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-14478IPR002100Transcription factor, MADS-box
CDDcd002662.93E-22580No hitNo description
PRINTSPR004041.2E-8525IPR002100Transcription factor, MADS-box
PfamPF003191.2E-111254IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGGEKRKIDI KFIEDKAVRS VTFCKRREGL FSKASELCLL SPTTQIAILA TPPSTNSHAG  60
FYSFGHSSVD HVVSSLLHDQ SPGDPTNQVE NRRLGFWWED QALERLESVD ELRDATDAVT  120
RMLNNVRLRL DAVKGNQRGG ALVIHQEDAR APKIRNTNKE KTNQITNSES ANSGLVIHQD  180
EVPQLCNTNT NYKNEETTTQ VANSEGASGS GSSVEKNDDV LHIDDLDIDD FFIDFNG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509836.11e-175PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-38AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLM4EEA41e-174M4EEA4_BRARP; Uncharacterized protein
STRINGBra027116.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.14e-69AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]