PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g035210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 321aa    MW: 35803.5 Da    PI: 4.0748
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g035210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-093869940
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                    r  t+ kRr+g++ KA  L+ L +a+vav+  
  Csa02g035210.1 38 RAPTYNKRREGLFSKAAQLCLLSGAQVAVLAT 69
                    677**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00122582IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-113496IPR002100Transcription factor, MADS-box
PfamPF003191.3E-83872IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2043874IPR002100Transcription factor, MADS-box
CDDcd002669.89E-1638102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVKSEKVNCL RKVRKNGEER GNEEKDRDKA DQDKDFPRAP TYNKRREGLF SKAAQLCLLS  60
GAQVAVLATP SSSESNVSFY SFGHSSVDGV VSAFLSGQPP VPDDDKAMRE DVAICLTRQN  120
LGLGFWWNDV TSEDPRVISD AIDSMCTLLG NLKKLRAHES SFVNNNNNQA AFVNDDHEDL  180
KKNNEMSDFI LDGATDQEPD QTLNHLQSIC TTSPIICCIP PPHAIDDLST CPDYDSLIAD  240
TVFTDDLPAD IIKQDQICES FCVTDNNNYS FTDQVNLDFD QELGIDQLID FDTDFESSLD  300
NWYTHQEIGL NLDQCFPYIS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g035210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501998.11e-137PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0GDK71e-109R0GDK7_9BRAS; Uncharacterized protein
STRINGXP_010501998.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-63M-type_MADS family protein