PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa06g021890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27579.2 Da PI: 4.0461 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.6 | 2.1e-15 | 12 | 50 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+ie k r vtfskRr+g++ KA+EL+ L da++a++ Csa06g021890.1 12 KKIEGKDARAVTFSKRRKGLFSKASELCLLSDAQIAILA 50 68999*******************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-13 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.404 | 4 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.82E-22 | 5 | 83 | No hit | No description |
PRINTS | PR00404 | 5.1E-8 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-15 | 10 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-15 | 13 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-8 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-8 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MGALKRKIDT EKKIEGKDAR AVTFSKRRKG LFSKASELCL LSDAQIAILA TPVSANSHNF 60 FYTFGHSSVD SVVAAFLADE TPTRDVDDEN LGFWWEDESL ANSENAEELG DAIVSMKRML 120 QDLKELQRDH QHVVVEKDNN NNKNNNNNAS SFTLRGNDDV GGCSNQGMEY FDQIFDSEVE 180 TQSQAMPMID YVGEGCSNQG LDFDQIFDSE VHETQSQAAM PMINLDDDEF FSSDFFNDFD 240 IDALYA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa06g021890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431101.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 1e-51 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HI75 | 2e-53 | R0HI75_9BRAS; Uncharacterized protein | ||||
STRING | XP_010515130.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G46408.1 | 7e-54 | AGAMOUS-like 97 |
Publications ? help Back to Top | |||
---|---|---|---|
|