PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00769.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 291aa    MW: 32637.2 Da    PI: 4.0728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00769.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.8e-111553240
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                             +i +k  r +tf+kRr g+  KA  L+v  da++a++  
  Rsa1.0_00769.1_g00002.1 15 KITDKASRATTFTKRRDGLYSKAAQLCVVSDAQIAILAT 53
                             6899*******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.778657IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-9666IPR002100Transcription factor, MADS-box
CDDcd002664.30E-20783No hitNo description
SuperFamilySSF554551.83E-14880IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-5828IPR002100Transcription factor, MADS-box
PfamPF003197.2E-121557IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-52843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVKKGGTKRK PVMTKITDKA SRATTFTKRR DGLYSKAAQL CVVSDAQIAI LATPSSSNSN  60
TPFFSFGHSS VDSVVSAYLS GQRLAPVSTC DNTKATREDL GICMARKDLG LGFWWNDEKL  120
VNSNDPEELM EAMESMKVLY SHLKGLEDQT LTTTTRIDDE DMVEISPESD EWSEMDINNL  180
LQDCDDVPPL HDVVSNTEED HNVSEKTCNN NNFVSLPELD EWSEMVLNQL LEDCDHVPEH  240
QNVSDETCNN NNNFVSLPVA GILEEEAMNI DWDTIFASNE ELLSDEYKMY V
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00769.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490867.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A3P6H2793e-93A0A3P6H279_BRAOL; Uncharacterized protein
STRINGBo6g013290.13e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-50M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]