PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g060500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20310.8 Da    PI: 4.5022
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g060500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.61.6e-0827531440
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40
                     kRrng++ KA  L+ L +a+vav+  
  Csa03g060500.1 27 VKRRNGLFSKAAQLCLLSGAQVAVLAT 53
                    69**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.465658IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-8666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-11878IPR002100Transcription factor, MADS-box
PfamPF003193.4E-81655IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVKKGGMKRK IAIKKIIKKS SQGPICVKRR NGLFSKAAQL CLLSGAQVAV LATPSSSESN  60
VSFNSFGHST VDGVVSAFLS GQRPVPVPNP EDDKAMREDV GICLTHTTEE QDQIFSLCES  120
FCITDNNNNN SITEVNLDFD QELGIDQLID YDTNFESSLD EWYTHQEIVL NLDQCFPYID  180
QLN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g060500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501998.11e-58PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6332e-27AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GDK72e-47R0GDK7_9BRAS; Uncharacterized protein
STRINGXP_010501998.15e-58(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-28M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]