PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g041620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 371aa    MW: 41748.4 Da    PI: 3.9229
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g041620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13.2e-151250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ienk  r v fskRr+g++ KA+EL+ L da++a++ 
  Csa05g041620.1 12 KKIENKDPRAVAFSKRRKGLFNKASELCLLSDAQIAILA 50
                    68**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-12164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.886449IPR002100Transcription factor, MADS-box
CDDcd002662.55E-22582No hitNo description
PRINTSPR004042.5E-5626IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-151280IPR002100Transcription factor, MADS-box
PfamPF003194.1E-141354IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGGLKRKIDT GKKIENKDPR AVAFSKRRKG LFNKASELCL LSDAQIAILA TPVSSNSHAS  60
FYSFGHSSVD NIVSAFLADQ TPRRDDDDEK LGFWWEDESL ANSQNPEELG AAIDSMKKML  120
HDLKELQNKQ RDRVQQTLDH QPCSSSLCLE LDDVSVNFQG FQDKNSVDDD LTVNVQGFQN  180
NTDEEQTLPN NDGLLGSFDG CNQEFDLDQL YDFVTKSEDL WKDMEMYDDC ADVEKEKGGS  240
HVTHQQQTLD HQPCSSSLCV DVDDVSVNLQ GFHNNNITEE QQTLAVSGSF DEELDVDDIW  300
KNLDLDDLSV SLQVFQNNTD DEEQTLANDD GLLGSFDGCN QEFDVDQLYD FVTKSEDVWK  360
DMGMYDDCLY *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g041620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513308.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-72AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HXS33e-82R0HXS3_9BRAS; Uncharacterized protein
STRINGXP_010513308.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.13e-75AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]