PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151512.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 345aa    MW: 38292.7 Da    PI: 4.0923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.83.2e-092256539
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                        r +tfskR  g+  KA  L+ L da++a++ 
  XP_009151512.1 22 KREYRATTFSKRCSGLYSKAAQLCLLADAQIAILA 56
                    566799**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-5973IPR002100Transcription factor, MADS-box
CDDcd002666.28E-181087No hitNo description
PROSITE profilePS5006612.0961055IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-121283IPR002100Transcription factor, MADS-box
PfamPF003191.5E-91960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVKRVGGGGT KRKIDKMEKI PKREYRATTF SKRCSGLYSK AAQLCLLADA QIAILATPPS  60
SQSNVSFFSF GHSTVDAVVK AYLTGRRLAP VREEPMEEDI GVLMARKELG LELWWEKESL  120
CESKDPRELM DAVKAMERML SKLRSGDFVS DEEDVTKSNE IMAKKSNVVL HQGTQEPDET  180
LDIQAVCCVP GDDLPHEGFD KITEEQDQIL ALCATDNNIN GLSGSGLDVY SQEVDIDELI  240
DWTTFESSVF DDGVLDSTQE HQGSLLMNFE AAAHDVSTNP NPPMSVSEGV EEEALVFQNK  300
AANDVSTMNP DDLIYDFEGV VEEEGFVFQN SVLDEDNLQF SDYFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151512.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLM4D0M80.0M4D0M8_BRARP; Uncharacterized protein
STRINGBra010027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.17e-60M-type_MADS family protein