PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608535.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 340aa    MW: 37216 Da    PI: 4.1481
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.3e-121250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  ++v fskRr+g++ K   L+vL +a+va++ 
  XP_013608535.1 12 KKIEKKESKSVAFSKRRKGLFSKTAQLCVLSGAQVAILA 50
                    689*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-8163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.895449IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-131080IPR002100Transcription factor, MADS-box
PfamPF003193.0E-121354IPR002100Transcription factor, MADS-box
CDDcd002664.36E-152277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGGLKRKIPT DKKIEKKESK SVAFSKRRKG LFSKTAQLCV LSGAQVAILA TPPCSKSNVS  60
FYSFGHSSVD SVVSAFLKNE YPREDHLGSE FWWEDKRLSE SEDPKELSEA VDSISRMMQN  120
LKGLRSKALS AGASSSCIHE DPPQNIKEED QIVEDNKDVV INATHQELDG NQTLGLQSSL  180
ASLCIQDVSR ENVEGFVNNS EHKNEIVTSS DSNNNNNGLL GSVDGFDQAL NLDDDFFDFE  240
MNSEGFITTN LEMNVDSTKG YSCAGSGSED GAMVVIPSNS IEDNQMVAVS DSTNALPGNL  300
YGCYQEFDID QIFDFVESTE DLSMNSEMDV ASMIASLIEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608535.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3EHV00.0A0A0D3EHV0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EAE20.0A0A3P6EAE2_BRAOL; Uncharacterized protein
STRINGBo9g178940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.14e-60AGAMOUS-like 99