PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g034010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20510.9 Da    PI: 4.6524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g034010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-151250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  r vtfskRr+g++ KA+EL+ L +a++a+i 
  Csa04g034010.1 12 KKIERKEPRAVTFSKRRKGLFSKASELCLLSGAQIAIIT 50
                    6899*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-13167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.507449IPR002100Transcription factor, MADS-box
CDDcd002664.32E-20584No hitNo description
PRINTSPR004045.4E-6626IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-161279IPR002100Transcription factor, MADS-box
PfamPF003193.2E-151364IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-62641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGGLKRKIDT EKKIERKEPR AVTFSKRRKG LFSKASELCL LSGAQIAIIT TPVSANSHNS  60
FYSFGHSSVD SVVAAFLADE TPTPTRDVDD ENLGFWWEDE SLAKSENAEE LAEAIDSMKR  120
MLHDLKEELQ RDDQHVPVDD VVEKENNNNN DASSLGLGLG LGVGGCNRGM EYFDQIVKYL  180
ASSSLA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g034010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507319.11e-136PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-55AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HI755e-56R0HI75_9BRAS; Uncharacterized protein
STRINGXP_010507319.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.11e-57AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]