PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G04640.1

Common Name

AGL99, T32M21_240

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 322aa MW: 36553.6 Da PI: 4.0949

Description

AGAMOUS-like 99

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G04640.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33	8e-11	12	49	2	39
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 ie k r v fskR g+ KA+ L+ L da++a+i AT5G04640.1 12 LIEKKDSRAVAFSKRSRGLYSKASDLCLLSDAQIAIIA 49 5999********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.381	3	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-11	3	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-5	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-15	5	78	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.32E-23	5	81	No hit	No description
Pfam	PF00319	4.0E-11	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-5	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020090	anatomy	embryo sac central cell

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGGVKRKISI ELIEKKDSRA VAFSKRSRGL YSKASDLCLL SDAQIAIIAT PVSSKSNVSF 60 YTFGHSSVDN VVAAFLTNQR PREGLGLDYW WEDERLSKSE DLEELRDAMD SMSKMLKDLK 120 DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA 180 LSMNLDMDDV SVVTTNQNPV SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN 240 NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL 300 MIQKDLPEDN LCFSDYFSDL HC

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18414629	0.0
Genevisible	250839_at	0.0
Expression Atlas	AT5G04640	-
AtGenExpress	AT5G04640	-
ATTED-II	AT5G04640	-

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G04640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G38740, AT5G40120, AT5G40220, AT5G58890, AT5G65330, AT1G65330

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G04640

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL162875	0.0	AL162875.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T32M21 (ESSA project).
GenBank	AL162972	0.0	AL162972.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E3 (ESSA project).
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ056669	0.0	DQ056669.1 Arabidopsis thaliana MADS-box family protein (At5g04640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_196084.1	0.0	AGAMOUS-like 99
Swissprot	Q9C633	1e-72	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	A0A178UP04	0.0	A0A178UP04_ARATH; AGL99
TrEMBL	Q9LZ61	0.0	Q9LZ61_ARATH; AGAMOUS-like 99
STRING	AT5G04640.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145
Representative plant	OGRP10843	2	8

Link Out ? help Back to Top
Phytozome	AT5G04640.1
Entrez Gene	830341
iHOP	AT5G04640
wikigenes	AT5G04640

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Boisson B,Giglione C,Meinnel T Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. J. Biol. Chem., 2003. 278(44): p. 43418-29 [PMID:12912986] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Day RC,Herridge RP,Ambrose BA,Macknight RC Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Hanada K, et al. Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Plant Cell, 2010. 22(12): p. 4084-97 [PMID:21189294] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]