PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC38630_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 292aa    MW: 32617.5 Da    PI: 3.8484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC38630_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.2e-12341240
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 +i +k  r +tf+kRr g+  KA  L+v +da++a++  
  RrC38630_p1  3 KITDKASRATTFTKRRDGLYSKAAQLCVITDAQIAILAT 41
                 6899*******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-6154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.016145IPR002100Transcription factor, MADS-box
CDDcd002668.42E-19171No hitNo description
SuperFamilySSF554554.19E-13268IPR002100Transcription factor, MADS-box
PfamPF003192.3E-12344IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTKITDKASR ATTFTKRRDG LYSKAAQLCV ITDAQIAILA TPSSSNSNVP FFSFGHSSVE  60
SVVSAYLSGQ RLAPVSTRET KAMREDLGIC MARKDLGLGF WWNDEKLVNS NDPEELMEAM  120
ESMKVLYSRL KELEDQTLTT TTTTIDDEDM VEISPESDXW SXMDLHKLLQ DCDCEEEDQS  180
VSDKTCNNSN SVSSAVERSW EEVAMDLDLD TIITYDDLPE LPPVVVSNTE KKEEEEDENV  240
SDNNNNSVSS LPAAAEKSLE EATMALDFDS IFEGLMSYDD VDLSWSDDLL FM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442004.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3CP682e-96A0A0D3CP68_BRAOL; Uncharacterized protein
STRINGBo6g013290.14e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.18e-44M-type_MADS family protein