PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00095.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 311aa    MW: 35123.2 Da    PI: 4.2535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00095.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.31.7e-071451239
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                             ri     + +tf+kR  g+  K   L+ L+da++av+ 
  Rsa1.0_00095.1_g00022.1 14 RIAKRESAATTFTKRTYGLHSKIAQLCLLTDAQIAVLA 51
                             777888899***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-4568IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.876550IPR002100Transcription factor, MADS-box
CDDcd002661.02E-15684No hitNo description
SuperFamilySSF554551.02E-10678IPR002100Transcription factor, MADS-box
PfamPF003192.2E-71455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVKKGTKRKP TIERIAKRES AATTFTKRTY GLHSKIAQLC LLTDAQIAVL ATPPSANSNV  60
SFFSFGHSSV DSIVNAFLTG ERPVREERDD KEDLGICFAR KELGLPQWWE DNALLKSKNL  120
QELNRAVNSM SRLLSKIKEL RADDAADEQE QPPPPLKKMK KTEPTVEQTL GLHKTLDCNN  180
NVMTEEEELD HIMSTCESFC LPRNNNKMTE PVDQPLIFPS DICVPDSNDF STEEMSLAYE  240
IEDINQLIDF DLDTTSLFLD DWLLESGDGF VETTTTTTQE SNSYYVACDY DASALNEDTD  300
FSDYLTQFLQ S
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00095.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484123.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3BYQ51e-125A0A0D3BYQ5_BRAOL; Uncharacterized protein
STRINGBo4g127100.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.15e-60M-type_MADS family protein