PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.11209s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 21994.7 Da PI: 5.3739

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.11209s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.7	2.3e-11	11	49	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 k+ienk ++v f+kRr+g++ KA+ L+ L ++++a++ Araha.11209s0002.1.p 11 KKIENKVAKTVAFTKRRAGLFRKASQLCLLSpGTQIAIL 49 68****************************757888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-10	3	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.213	3	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-9	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.12E-13	5	76	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-10	12	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-9	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGGKKRKIKI KKIENKVAKT VAFTKRRAGL FRKASQLCLL SPGTQIAILA TPMTSNSHAS 60 FYSFGHSSVD SVVSSLLYDQ PPLPANQDNR SGLGFWWEDK RFDVSENVEE LKDAVDAVSR 120 MLNNVRLRLN DAVKNTQRDG GLEILPQEEE VHQIRNEETK TNQFEGETSG SASFLENEED 180 ILHFDDFFSD IDPLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.11209s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC018908	0.0	AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888121.2	1e-123	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	2e-40	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	D7KW78	1e-115	D7KW78_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__374__AT1G60880.1	1e-115	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60880.1	1e-101	AGAMOUS-like-56

Link Out ? help Back to Top
Phytozome	Araha.11209s0002.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]