PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00134.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 267aa MW: 30092.6 Da PI: 3.9845 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36 | 8.7e-12 | 15 | 52 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +i nk r +tf+kRr g+ KA L+v d+++av+ Rsa1.0_00134.1_g00010.1 15 KITNKASRATTFTKRRDGLYSKAAQLCVVSDVQIAVLA 52 699*********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.484 | 6 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-9 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-12 | 7 | 55 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.89E-16 | 7 | 56 | No hit | No description |
PRINTS | PR00404 | 1.5E-5 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-12 | 15 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MVKKGGTKRK PVMTKITNKA SRATTFTKRR DGLYSKAAQL CVVSDVQIAV LATPSSLLSS 60 RSVTPPLSIC MARKDLGLGF WWDDEKLVNS NDPEELMEAM ESMKVLYSRL KGLEDQTLTT 120 TTTRIDDEDM VEISPESDEW SEMDLLKLLQ DCDCDDVPPL HDVVSNTEED HNVSEETCNN 180 NNNNFVSLPE LDEWSEMVLN QLLEDCDHVP EPPVFTDKEE ENHNVSDFAS LPEAVAGILE 240 EEAMNIDWDT VFASGEELLS DEYKMYV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00134.1_g00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488001.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A3P6H279 | 5e-69 | A0A3P6H279_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g013290.1 | 2e-68 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49420.1 | 7e-33 | M-type_MADS family protein |