PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122928.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33847.3 Da    PI: 4.5496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-111250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  ++v fskRr+g++ K   L+vL +a+va++ 
  XP_009122928.1 12 KKIERKESKSVAFSKRRKGLFSKTAQLCVLSGAQVAILA 50
                    689*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-7163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.853449IPR002100Transcription factor, MADS-box
CDDcd002661.35E-19580No hitNo description
SuperFamilySSF554553.27E-131079IPR002100Transcription factor, MADS-box
PfamPF003197.3E-121354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGGLKRKIPT DKKIERKESK SVAFSKRRKG LFSKTAQLCV LSGAQVAILA TPPCSKSNVS  60
FYSFGHSSVD NVVSAFLKDQ YPREDHLGSE FWWEDKRLAE SEDPKELSEA VDSISRMMQN  120
LKGLRSKALA NREDAKKKKK EVVFDQSQTL NFQSAGASSS YIHEDQPENL QGLVKIFKEE  180
DQKVAVSDKN NNNNKDVIQG THQELDGDQA LGFESYLASL CIQDVSPENV EGFVNNSEIA  240
TSSDSNNNNN GLLENLDGFD QVINLDDDFF DFEMNSEGFI TTNLEMNVAS TNGYSCAGSG  300
SEDGAY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122928.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLM4CYY90.0M4CYY9_BRARP; Uncharacterized protein
STRINGBra009436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.14e-52AGAMOUS-like 99