PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552915.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25461.2 Da    PI: 7.8771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.5e-111554443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r+v fskRr g++ KA  L+   +a vav+   ++
  XP_010552915.1 15 ETKAQRSVAFSKRRRGLFQKAADLCRISGASVAVLTTPPS 54
                    67899*****************************987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.059456IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-12465IPR002100Transcription factor, MADS-box
CDDcd002662.31E-21582No hitNo description
PRINTSPR004041.1E-5626IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-15676IPR002100Transcription factor, MADS-box
PfamPF003193.0E-111557IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAGGTKRKIE IAKRETKAQR SVAFSKRRRG LFQKAADLCR ISGASVAVLT TPPSDKPGFY  60
SFGHSSVDNV VEAFLSGHRP TSPAPETRDY FADTKLGLEF LSETPDDPEE LQSLIDRAQE  120
LRNNVALLLE TRGQQSASRE CKNYALPILK SDVNCSGFVG SHYLGSGRGF CLDGAEFPFS  180
GTDQGNTTSR IQETVNDFNC GYGSIKIGHS DNGDQLQQGS TSPTTTRLSS SSIRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552915.11e-174PREDICTED: agamous-like MADS-box protein AGL97
STRINGXP_010552915.11e-173(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-27AGAMOUS-like 55