PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10040s0123.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23327.1 Da    PI: 4.7839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10040s0123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-131150139
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavii 39
                          ++ienk ++ v f+kRrng++ KA+EL+ L  d+++a++ 
  Bostr.10040s0123.1.p 11 EKIENKNKKMVAFTKRRNGLFRKASELCLLSpDTQIAILA 50
                          57****************************7699999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.886340IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-11364IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-15477IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-9525IPR002100Transcription factor, MADS-box
PfamPF003198.6E-131254IPR002100Transcription factor, MADS-box
CDDcd002668.61E-161584No hitNo description
PRINTSPR004041.1E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGGKKQKIKI EKIENKNKKM VAFTKRRNGL FRKASELCLL SPDTQIAILA TPVSHNSHAS  60
FYSFGHSSVD HVVSRLLYDQ PPLPANQENR RSGLGFWWED KGFDVSENVD DLKEAVDAVS  120
RMLNNVRLRL DDALKSNQRD KSLVIHQEEE AEEEVLQLLN EETTTPNQIP ILEGETSGSA  180
SNLLVNEADN LHIDDFFTDF DIDFLS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10040s0123.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301329.19e-99agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-41AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEI92e-97R0GEI9_9BRAS; Uncharacterized protein
STRINGBostr.10040s0123.1.p1e-151(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.15e-79AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]