PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547911.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 281aa    MW: 31697.9 Da    PI: 4.1429
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.5e-121150140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    +rie k +r+  f+kRr g+  KA+EL+ L da++a++  
  XP_010547911.1 11 ERIEKKEKRSLAFTKRRDGLYRKASELCLLFDARIAILAT 50
                    69**********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-10363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.624348IPR002100Transcription factor, MADS-box
CDDcd002663.38E-22583No hitNo description
PRINTSPR004043.3E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-17581IPR002100Transcription factor, MADS-box
PfamPF003194.3E-131253IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGGLRRKISM ERIEKKEKRS LAFTKRRDGL YRKASELCLL FDARIAILAT PPTSNSNVSF  60
YSFGHSSVSD VVDAFLENRR PSDSNDCLSE LSGCGMRSGG RGLGFWWEEE GFDMSENMED  120
LKDAIDEIQK LKNDVDLRLK AMKDRQDSCN DALREIEAFL DEPEQESDQS PFLAKEIQDF  180
WVQCFSNNDA EDVYSNLGVS PSQTEKTSED NDVILISDSE DESAKGDVIL ISDSEDESAK  240
DDVFRNENWR NEAGAAIESG TGCKNRVEDP HLDDLLIDLI Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547911.10.0PREDICTED: MADS-box protein SOC1-like
STRINGXP_010547911.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.14e-42AGAMOUS-like 97