PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00093550001
Common NameGSBRNA2T00093550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26391.4 Da    PI: 4.151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00093550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131352140
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         k+i nk  r +tfskRr g+  KA  L+vL da++a++  
  GSBRNA2T00093550001 13 KKITNKASRATTFSKRRDGLYSKAAQLCVLSDAQIAILAT 52
                         689*********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273556IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-15565IPR002100Transcription factor, MADS-box
CDDcd001204.04E-19650No hitNo description
SuperFamilySSF554556.15E-17779IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-8727IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131455IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82742IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSNSNA  60
SFFSFGHFSV ESVVSAYLSG QRLTPVSSSR FWWEDDKLVN SKNPKELMEA MESMEVLMSH  120
LKRLEDQTLT TTVDEDKVEI SPDLDEWSDM DLNQLLEDCD DVPVPPPVVC NTDKEEGQNV  180
SEKTCNNNSN SVSSSLPAAA EKSLEEATMD LDFDSIFEGL ISYDDEDLFW SDELLSM*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00093550001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022557400.11e-141agamous-like MADS-box protein AGL97
RefseqXP_022563468.11e-142agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-45AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078II691e-173A0A078II69_BRANA; BnaC06g02000D protein
STRINGBo6g013290.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.19e-36AGAMOUS-like 97
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]