PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148220.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27511.7 Da    PI: 4.0964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.4e-131351139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+i nk  r +tfskRr g+  KA  L+vL da++a++ 
  XP_009148220.1 13 KKITNKASRATTFSKRRDGLYSKAAQLCVLSDAQIAILA 51
                    689*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273556IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-15566IPR002100Transcription factor, MADS-box
CDDcd002661.76E-19686No hitNo description
SuperFamilySSF554552.49E-17781IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9727IPR002100Transcription factor, MADS-box
PfamPF003191.6E-131455IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-92742IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-94263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSSNSN  60
ASFFSFGHSS VESVVSAYLS GQRLPPVSWR DTREDLGICM ARKDLGLGFW WDDDKLVNSK  120
NPEELMEAME SMKVLMSHLK GLEDQTLTTV DEEISPDLDE WSEMELTQLL QDCDDDVPPP  180
PLVSNTDNKE EEDQTVSEKN NNYVSSLPEK SLEEVTMDLD FDTIFEGLVP YDEADLFWSD  240
DLLFT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148220.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6332e-41AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A397YU641e-179A0A397YU64_BRACM; Uncharacterized protein
TrEMBLM4DQD41e-179M4DQD4_BRARP; Uncharacterized protein
STRINGBra018727.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-45M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]