PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00143104001

Common Name

GSBRNA2T00143104001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 263aa MW: 29043.3 Da PI: 4.2459

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00143104001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.2	4.9e-09	21	55	5	39
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevavii 39 r +tfskR g+ KA L+ L da++a++ GSBRNA2T00143104001 21 KREYRATTFSKRCSGLHSKAAQLCLLADAQIAILA 55 566799**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.5E-5	8	72	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.18E-18	9	86	No hit	No description
PROSITE profile	PS50066	11.746	9	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-12	11	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-9	18	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVKSGRGGTK RKIDKMEKIP KREYRATTFS KRCSGLHSKA AQLCLLADAQ IAILATPPSS 60 QSNVSFFSFG HSSVDAVVNA YLTGQRLAPV REEPMEEDIG LWWEKESLCE SKDPRELMDA 120 VKAMERMLSK LRSGDFVSDE EDLIKSNVTS EEQDQILAIC DSFCATDKNI NGLSGGLDVY 180 NQEMDIDELI DWTTFESSVF DDGVLDSTQE LAGINSTNFE AAAHDVSTNP NPPIYNYYHE 240 GVEDEALVFQ NKAANDVSEQ SC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00143104001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594963.1	0.0	PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL97
TrEMBL	A0A3P6ES20	1e-170	A0A3P6ES20_BRAOL; Uncharacterized protein
STRING	Bra010027.1-P	1e-145	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38620.1	1e-46	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]