PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07319.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 304aa MW: 33928.6 Da PI: 4.0076 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.9 | 2.3e-12 | 15 | 53 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i nk r +tf+kRr g+ KA L+v +da++a++ Rsa1.0_07319.1_g00001.1 15 KIANKASRATTFTKRRDGLYSKAAQLCVITDAQIAILAT 53 699********************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-11 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.199 | 6 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.47E-20 | 7 | 83 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-15 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-12 | 15 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVKKGGTKRK PVMTKIANKA SRATTFTKRR DGLYSKAAQL CVITDAQIAI LATPSSSNSN 60 TPFFSFGHSS VESVVSAYLS GQRLAPVSTC DNTKATREDL GICMARKDLG LGFWWDDDKL 120 VNSNDSEELM EAMESMKVLQ SHLKRLEDQT LTTTTTTVDE DMVEISPESD EWSEMDLLKL 180 LQDCDCDCDD VPPLHDVVSN TEEDHNVSEK TCNNNNFVSL PELDEWSEMV LNQLLEDCDH 240 VPEPPVFGNT DQEEEDHNVS DNSNFVSLPE AVVGSLEEEA MNIDWDTVFA SGEELLSDEY 300 KMYV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07319.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488288.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A3P6H279 | 3e-91 | A0A3P6H279_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g013290.1 | 4e-91 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49420.1 | 1e-46 | M-type_MADS family protein |