PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029256m
Common NameEUTSA_v10029256mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 348aa    MW: 38320.5 Da    PI: 4.0802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029256mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF282.7e-091653340
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     i  k    + fskR  g++ KA+ L+ L da++av+  
  Thhalv10029256m 16 ITKKESLATAFSKRSYGLFSKASQLCLLSDAQIAVLAT 53
                     566666789**************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-9669IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.278651IPR002100Transcription factor, MADS-box
CDDcd002661.15E-18786No hitNo description
SuperFamilySSF554551.1E-12880IPR002100Transcription factor, MADS-box
PfamPF003197.7E-101556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVKRGGTKRK IPMEKITKKE SLATAFSKRS YGLFSKASQL CLLSDAQIAV LATPPSSNSN  60
VSFFSFGHSS VDSVVSAFLK GKRLPPVARE ETREEDIGVC LARKDLGLGL WWEDEVLAQS  120
ENPQELMDAM NSMSSLLRKF KELRCVGSNP NSDQTLIRQL GNEKSEPDQT LIPDSALPAS  180
FNEMTEEQSQ VSSNSDQTLT RQFDNEKSEP GQTLIPDDDL PASFNAMTEE QSQIVAICES  240
FCGTEEKNNI NNNNDDDKGL TGSLDVGFDQ EVDIDQLIDF DMAFDTSVFD VCLLESTQEE  300
TTGSLLINSD PISVSQGFEE DAMLHQTRAL DQDSLRFSDF YNTIAAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029256m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397046.10.0agamous-like MADS-box protein AGL97
TrEMBLV4L4E20.0V4L4E2_EUTSA; Uncharacterized protein
STRINGXP_006397046.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.17e-74M-type_MADS family protein