PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g024140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 21561 Da PI: 4.8839 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.5 | 6.3e-12 | 12 | 51 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+ie k + v fskRr+g+ A+EL+ L da++a+i+ Csa16g024140.1 12 KKIETKDPQAVVFSKRRKGLYSRASELCLLSDAQIAIIVT 51 679999999*****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-7 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.484 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.24E-16 | 5 | 82 | No hit | No description |
PRINTS | PR00404 | 2.1E-5 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-13 | 11 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-11 | 13 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-5 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-5 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGGLKRKIDR GKKIETKDPQ AVVFSKRRKG LYSRASELCL LSDAQIAIIV TPISSNSHAA 60 FYTFGHSSIN GVVVAFLADQ TPLWDDDDDE KLGFWWEDES LANSDYPEDL GAAIDSMTKM 120 LHDLKELQNK QRDRVDVEEK EKGGSHVTYL KNDMKELEDK QRDLVEVEKE NNNNASRENV 180 GGSCNQGARA GGL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g024140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474146.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 1e-51 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HI75 | 1e-61 | R0HI75_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474146.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46408.1 | 5e-54 | AGAMOUS-like 97 |
Publications ? help Back to Top | |||
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