PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g052790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22457.2 Da    PI: 6.5161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g052790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.97.1e-101241231
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC 31
                     ie k +++v f+kR++g++ KA+ L+ L 
  Csa16g052790.1 12 NIERKDRKTVAFTKRKEGLFRKASKLCLLF 41
                    799************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0032363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.175351IPR002100Transcription factor, MADS-box
CDDcd002665.82E-17484No hitNo description
SuperFamilySSF554551.11E-11478IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-6525IPR002100Transcription factor, MADS-box
PfamPF003191.9E-71341IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-62540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGTKRKIEI ENIERKDRKT VAFTKRKEGL FRKASKLCLL FPATRIAILA TPLTANSHAS  60
FYSLGHPSVD HVVSTLLNGQ PPANQLENNS SSGLGFWWED KGFDVSENVD ELNEAVNAVS  120
SMLNHARLRL DDAVKTNQRG RNLVIHQEKG KEVLRLGNED TNQIHKFEQG ETSASASLLK  180
NEEDTLHIDD FFTDFHIDPF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g052790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093056.11e-147PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-35AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEI91e-102R0GEI9_9BRAS; Uncharacterized protein
STRINGXP_010430081.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-85AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]