PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g057290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19654.4 Da    PI: 9.7641
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g057290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.91.9e-111149139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  r v fskRr+g+  KA+ L+ L +a+ a++ 
  Csa12g057290.1 11 KKIEKKESRAVAFSKRRTGLYRKASKLCLLSGAQMAILT 49
                    68**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.007348IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-11363IPR002100Transcription factor, MADS-box
CDDcd002662.39E-20471No hitNo description
SuperFamilySSF554551.57E-15473IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-8525IPR002100Transcription factor, MADS-box
PfamPF003192.3E-121250IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGGKRKKIPM KKIEKKESRA VAFSKRRTGL YRKASKLCLL SGAQMAILTT PCSSNSHASF  60
YSSVDGVVAA FLNDQRSLRE EVNLGGLGED PEELRGAIDS MSKLLKNLKE LRDRVDSVNQ  120
RDHQDDVKNN NIKKEDLVLH ETLNLQSTSA ISDSLPIDHF NKIAKEQDQI MATGNLG*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g057290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451518.11e-115PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-36AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0F8654e-63R0F865_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010451518.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.13e-36AGAMOUS-like 99
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]