PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g057290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 19654.4 Da PI: 9.7641 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.9 | 1.9e-11 | 11 | 49 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+ie k r v fskRr+g+ KA+ L+ L +a+ a++ Csa12g057290.1 11 KKIEKKESRAVAFSKRRTGLYRKASKLCLLSGAQMAILT 49 68**********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.007 | 3 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.8E-11 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.39E-20 | 4 | 71 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-15 | 4 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-12 | 12 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MGGKRKKIPM KKIEKKESRA VAFSKRRTGL YRKASKLCLL SGAQMAILTT PCSSNSHASF 60 YSSVDGVVAA FLNDQRSLRE EVNLGGLGED PEELRGAIDS MSKLLKNLKE LRDRVDSVNQ 120 RDHQDDVKNN NIKKEDLVLH ETLNLQSTSA ISDSLPIDHF NKIAKEQDQI MATGNLG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g057290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451518.1 | 1e-115 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 5e-36 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0F865 | 4e-63 | R0F865_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010451518.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04640.1 | 3e-36 | AGAMOUS-like 99 |
Publications ? help Back to Top | |||
---|---|---|---|
|