PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g095430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22443.1 Da    PI: 6.1623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g095430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.93.5e-101243233
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda 33
                     ie k +++v f+kR++g++ KA+ L+ L  a
  Csa09g095430.1 12 NIERKDRKTVAFTKRKEGLFRKASKLCLLSPA 43
                    799**************************744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0021363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.965351IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-11478IPR002100Transcription factor, MADS-box
CDDcd002661.09E-17484No hitNo description
PRINTSPR004043.6E-6525IPR002100Transcription factor, MADS-box
PfamPF003192.1E-71341IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-62540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGTKRKIDI ENIERKDRKT VAFTKRKEGL FRKASKLCLL SPATRIAILA TPLTANSHAS  60
FYSLGHPSVD HVVSTLLNGQ PPANQLENNS SSGLGFWWED RGFDVSENVD ELKEAVDAVS  120
SMLNYARLRL DDAVKSNQRG MNLVIHQEKG KEILRLGNED TNQIHKFEQG ETSASASLLK  180
NEEDTLHIDD YFTDFHIDPF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g095430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085269.11e-148PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-37AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEI91e-103R0GEI9_9BRAS; Uncharacterized protein
STRINGXP_010430081.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-91AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]