PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023813m
Common NameEUTSA_v10023813mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22961.7 Da    PI: 4.9765
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023813mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.5e-111249238
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                     +ie k   +v f+kRrng++ KA+EL+ L  ++++a++
  Thhalv10023813m 12 KIEKKNAISVAFTKRRNGLFRKASELCLLSpATQIAIL 49
                     79999999*********************835677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-8364IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-14576IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7525IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.554551IPR002100Transcription factor, MADS-box
PfamPF003192.2E-101254IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGGIKRKIKI EKIEKKNAIS VAFTKRRNGL FRKASELCLL SPATQIAILA TPPSSNSHAS  60
FYSFGHSSVD HVVTSLLYEQ SPLPTNQENK QGSGLGFWWE DEAFDRSENL EELKDATDAV  120
SRMLNNVRLR LDTMKSNNQR DGGLVIHQEE VPQLLNTKTN NNEETTNQIT EFEGTSGSES  180
LVKNDDDILR LDDFFTDLKI DPLF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023813m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392097.11e-150agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-43AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLV4KPT81e-149V4KPT8_EUTSA; Uncharacterized protein
STRINGXP_006392097.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.16e-75AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]