PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0207.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 445aa    MW: 49998.2 Da    PI: 4.1135
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0207.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.58.4e-141250240
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                          +ie k  r vtfskRr+g+  KA+EL+ L da +a+i  
  Bostr.26959s0207.1.p 12 KIEKKDPRAVTFSKRRKGLYSKASELCLLSDAHIAIIAT 50
                          7999********************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-16365IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.442348IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-17578IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-8525IPR002100Transcription factor, MADS-box
CDDcd002664.06E-22583No hitNo description
PfamPF003194.5E-141262IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGGVKRKISI EKIEKKDPRA VTFSKRRKGL YSKASELCLL SDAHIAIIAT PVSSNSNAAF  60
YTYGHSSVDS IVAAFLANER PRDERLGFWW EDESLANSEN PEELRDAMDS MSKMLQDLKE  120
LEKRRDREDV KKKGVSHGTH QKQTLNPRPC SASLCIQDDI TVNFKGFHKN TEEQILTVSD  180
NSNSNGLLRN IDGCNQELDL DQIFDFVTNS EVLSMNLDMD DVSMVTKNQK PFSDSEAVED  240
RELVIHRDLD EGVPHLSDLD EDQMLAISDN NNNALLGNVG GCNQELDFYQ IIDSEVETKS  300
EGLSMNDVLM ATTYQNPCSD SEAVVDGESV THRDLYDNNI HLSDWDEDQI LAISDNNNNN  360
NNVLPGNLVW FNQELDLDQI TDFETNSESL LMNLEMDGVL MATMKQNMCS DSETVEDGRL  420
VIHRDLDEDN LCFSEIFNDS IATL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0207.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879307.11e-154LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-99AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-121A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-121Q9LZ61_ARATH; AGAMOUS-like 99
STRINGBostr.26959s0207.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-100AGAMOUS-like 99
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]