PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144321001

Common Name

GSBRNA2T00144321001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 297aa MW: 32781.5 Da PI: 4.1934

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144321001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.1	2.6e-09	22	56	5	39
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevavii 39 r +tfskR g+ KA L+ L da++a++ GSBRNA2T00144321001 22 KREYRATTFSKRCSGLYSKAAQLCLLADAQIAILA 56 566799**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.0E-5	9	73	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.76E-19	10	87	No hit	No description
PROSITE profile	PS50066	12.096	10	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-12	12	84	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-9	19	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MVKRVGGGGT KRKIDKMEKI PKREYRATTF SKRCSGLYSK AAQLCLLADA QIAILATPPS 60 SQSNVSFFSF GHSSVDAVVK AYLTGRRLAP ELGLELWWEK ESLCESKDPR ELMDAVKAME 120 RMLSKLRSGD FVSDEEDVTK SNEIMAKKSN VVLHQGTQEP DETLDIQAVC CVPGDDLPHE 180 GFDKITEEQD QILALCATDN NINGLSGSGL DVYSQEVDID ELIDWTTFES SVFDDGVLDS 240 TQEHQGSLLM NFEAAAHDVS TNPNPPMSVS EVEEEGFVFQ NSVLDEDNLQ FSDYFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144321001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151512.1	0.0	PREDICTED: agamous-like MADS-box protein AGL97
TrEMBL	M4D0M8	0.0	M4D0M8_BRARP; Uncharacterized protein
STRING	Bra010027.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38620.1	5e-65	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]