PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610889.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 198aa MW: 21877.5 Da PI: 4.6573

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.4	3.3e-12	12	49	2	38
---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 ie k+ ++v f+kRrng++ KA EL+ L a++a++ XP_013610889.1 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSAQIAIL 49 79***************************725788876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-9	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.199	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-14	5	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-10	13	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA 60 FYSFGHSSVD HVVSSLLNDT CPLPTEQENK SGLGFWWEDE GFERSENIDE LKEATDAVSR 120 MLNNLRLRLD ALKSNQSGGA LVIHQEEVLP ICDTETNNNE EMTNQITRLE GASGSLVEYV 180 EDSLPNDGFF GDVKIDTL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610889.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610889.1	1e-146	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	8e-42	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	A0A0D3E567	1e-144	A0A0D3E567_BRAOL; Uncharacterized protein
STRING	Bo9g043530.1	1e-145	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	2e-67	AGAMOUS-like 55

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]