PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g062030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 179aa MW: 19845.2 Da PI: 5.5879

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g062030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.2	1.9e-12	12	48	2	37
---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC.daevav 37 i+nk ++v fskRrng++ KA+EL+ L d ++a+ Csa07g062030.1 12 EIQNKAAKTVAFSKRRNGLFRKASELCLLSpDSRIAI 48 699*************************964556655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	3.94E-18	3	81	No hit	No description
SMART	SM00432	9.9E-8	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.442	3	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-13	5	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-12	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGGKKHKIDI AEIQNKAAKT VAFSKRRNGL FRKASELCLL SPDSRIAILA TPLSSNSHAS 60 FYSFGHSSVD QVVSSLLQDQ HLLPANLLDR EQNVDELKEA IDAVSRMLNN ARVRLDDAVK 120 SNQRDGRLMI CNEETKTTNQ NHILEGESSG SASTLLVNEE DNLHFDDYFT DFNIDPLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g062030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474561.1	1e-107	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	2e-33	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0GEX7	1e-75	R0GEX7_9BRAS; Uncharacterized protein
STRING	XP_010474561.1	1e-106	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	2e-61	AGAMOUS-like 55

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]