PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01854.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 292aa    MW: 32978.6 Da    PI: 4.0797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01854.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.2e-121553240
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                             +i +k  r +tf+kRr g+  KA  L+v +da++a++  
  Rsa1.0_01854.1_g00005.1 15 KITDKASRATTFTKRRDGLYSKAAQLCVITDAQIAILAT 53
                             6899*******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.016657IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-10666IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-15789IPR002100Transcription factor, MADS-box
CDDcd002663.28E-19780No hitNo description
PRINTSPR004044.8E-5828IPR002100Transcription factor, MADS-box
PfamPF003192.3E-121556IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-52843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVKKGGTKRK PVMTKITDKA SRATTFTKRR DGLYSKAAQL CVITDAQIAI LATPSSSNSN  60
VPFFSFGHSS VESMVSSGQR LAPVSTCDNT KATREDLGIC MARKDLGLGF WWDDDKLVKS  120
NDPEELMEAM ESMKVLYNRL KELEDQTLTT TTRIDDEDMV EISPESDEWS EMDLHKLLQD  180
CDCDCDDVPP LHDVVSNTEE DHNVSEQTCN NNNNFVSLPE LDEWSEMVLN QLLEDCDHVP  240
EHHNVSEETC NNNNFVSLPV AGILEEEAMN IDWDTIFASD EELLSDEYKM YV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01854.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490867.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A3P6H2799e-83A0A3P6H279_BRAOL; Uncharacterized protein
STRINGBo6g013290.11e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-46M-type_MADS family protein