PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g079830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 375aa    MW: 41887.4 Da    PI: 4.3529
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g079830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.6e-161250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ienk  r vtfskRr+g++ KA+EL+ L da++a++ 
  Csa05g079830.1 12 KKIENKDPRAVTFSKRRKGLFSKASELCLLSDAQIAILA 50
                    68**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-15164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.446449IPR002100Transcription factor, MADS-box
CDDcd002661.04E-23583No hitNo description
PRINTSPR004042.8E-6626IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-171298IPR002100Transcription factor, MADS-box
PfamPF003195.5E-151354IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-62641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGGLKRKIDT GKKIENKDPR AVTFSKRRKG LFSKASELCL LSDAQIAILA TPVSSNSHAS  60
FYSFGHSSVD NVVSAFLAGQ TPSRDDDDDE KLGFWWEDES LANSQNPEEL GCAIDSMRKM  120
LHDLKELQNK QRVRVDVEEK EKAGPSHVTH QPNDLEELEN NKQRDLVEVE KENNNNNALS  180
GNVGGGLEDF DQLIDYAINS DVFNDLPSID SDFSIDVDEK EKGGSHVTHL KNDLKVLEGK  240
ERDLVEVDKE NNNNALRENV GGCNQELEDF DQFIDYSINS DFFNEFITSI DSDFFTDLPS  300
IDSVFFIAWS KSILLYASST TDVFGWNLPP SFLHLTKTRI AGCGAWDLEP HNLLMDRKTM  360
TLKIADLGLA IANE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g079830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513620.10.0PREDICTED: agamous-like MADS-box protein AGL97
STRINGXP_010513620.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.16e-56AGAMOUS-like 97