PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023871m
Common NameEUTSA_v10023871mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23027.6 Da    PI: 4.4694
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023871mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.58.3e-091148137
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevav 37
                     ++ienk  ++v f+kRr g++ KA+ L+    ++++a+
  Thhalv10023871m 11 EKIENKEVKSVYFTKRRDGLFSKASQLCLISpATQIAI 48
                     57**************************8762455655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-7364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.741551IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-13578IPR002100Transcription factor, MADS-box
PfamPF003196.6E-81249IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-72540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGGIKRKIKI EKIENKEVKS VYFTKRRDGL FSKASQLCLI SPATQIAILA TPLSSNSHAS  60
FYSFGHSSVD HVVSSFLYDQ SPLSTNQENK QGSELGFWWE DEAFDRSENL EELKDATDAV  120
SRMLNNVRLR LDAVKSNNQR DGGLVIDQKE VPQLLNTKTN YNEETTNQIT EFDGTFGDKI  180
LSEDEEDILT IDDYFTDVKL DPF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023871m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392103.11e-149agamous-like MADS-box protein AGL97
SwissprotQ9C6332e-45AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLV4KE031e-148V4KE03_EUTSA; Uncharacterized protein
STRINGXP_006392103.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.18e-69AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]