PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066948001
Common NameGSBRNA2T00066948001, LOC106394221
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 267aa    MW: 29455 Da    PI: 4.6645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066948001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-121453140
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         k+i +ks + vtf+kRr g++ KA  L+ L da++a++  
  GSBRNA2T00066948001 14 KKITDKSSKAVTFTKRRDGLFSKAAQLCLLGDAQIAILAT 53
                         6899********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.979657IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-14666IPR002100Transcription factor, MADS-box
CDDcd002662.60E-22786No hitNo description
PRINTSPR004047.5E-8828IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-16880IPR002100Transcription factor, MADS-box
PfamPF003195.7E-121555IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-82843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN  60
VSFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSREMREDI AVCMARKELG LGYWWEDEKL  120
LASKSREEIM EAMESMQILW KAAERLRDEY VVEFDRRKGS HEKKEDMSND QTTLISTEDD  180
QIIAVCDSFF NYNNNNAALS TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND  240
LANVDLDTIF EGLADLDAEL VASFLM*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066948001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690264.10.0agamous-like MADS-box protein AGL97
RefseqXP_022574614.10.0agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078JN160.0A0A078JN16_BRANA; BnaUnng02600D protein
STRINGBo8g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.12e-44M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]