PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g032730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28124.2 Da PI: 4.3911 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.9 | 3e-09 | 13 | 50 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +ie k v f kRr+g+ KA+ L+ L da +a+i Csa07g032730.1 13 KIERKDPPAVAFFKRRKGLYSKASQLCLLSDAHIAIIA 50 678888889**************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-4 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.25E-16 | 5 | 82 | No hit | No description |
PROSITE profile | PS50066 | 11.199 | 12 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-11 | 12 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-9 | 13 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGGLKSKIDT GKKIERKDPP AVAFFKRRKG LYSKASQLCL LSDAHIAIIA SPVSSNSHAS 60 FYTFGHSSVD SVVAAFLADQ TPLRDDDERK MLHDLKELEK KQRDRVDVEK EKGVLHVTHQ 120 QQTLDHQPCS SSSLCVEVDD VYVNVQGFHN NNTKEQQALA VSVYNNNLVG SFSEELDVDD 180 KIFDCETKPE FLWENLEMDD LTVNVQGFQN NIDEEQTLAN DDGLLGSFDG CNQEFDLDQL 240 FDFVTKSEDL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g032730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511682.1 | 2e-94 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 4e-62 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A178W509 | 6e-59 | A0A178W509_ARATH; AGL97 | ||||
STRING | XP_010511682.1 | 8e-94 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46408.1 | 2e-64 | AGAMOUS-like 97 |
Publications ? help Back to Top | |||
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