PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594963.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 293aa    MW: 32543.2 Da    PI: 4.2425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.9e-092155539
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                        r +tfskR  g+  KA  L+ L da++a++ 
  XP_013594963.1 21 KREYRATTFSKRCSGLHSKAAQLCLLADAQIAILA 55
                    566799**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-5872IPR002100Transcription factor, MADS-box
CDDcd002661.62E-18986No hitNo description
PROSITE profilePS5006611.746954IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-121183IPR002100Transcription factor, MADS-box
PfamPF003196.3E-91859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVKSGRGGTK RKIDKMEKIP KREYRATTFS KRCSGLHSKA AQLCLLADAQ IAILATPPSS  60
QSNVSFFSFG HSSVDAVVNA YLTGQRLAPV REEPMEEDIG VLMARKELGL ELWWEKESLC  120
ESKDPRELMD AVKAMERMLS KLRSGDFVSD EEDLIKSNVV LHQGTQEPDD DLPHEGFDKT  180
SEEQDQILAI CDSFCATDKN INGLSGGLDV YNQEMDIDEL IDWTTFESSV FDDGVLDSTQ  240
ELAGINSTNF EAAAHDVSTN PNPPIYNYYH EGVEDEALVF QNKAANDVSE QSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594963.10.0PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL97
TrEMBLA0A3P6ES200.0A0A3P6ES20_BRAOL; Uncharacterized protein
STRINGBra010027.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.12e-53M-type_MADS family protein